EuGene'Hom | Tool name | EuGene'Hom |
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| URL | http://genopole.toulouse.inra.fr/bioinfo/eugene/EuGeneHom/cgi-bin/EuGeneHom.pl |
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| Important features | It is a gene prediction software for eukaryotic organisms based on comparative analysis. |
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| Citations | Foissac S, Bardou P, Moisan A, Cros MJ, Schiex T. EUGENE'HOM: A generic similarity-based gene finder using multiple homologous sequences. Nucleic AcIDs
Res. 2003 Jul 1;31(13):3742-5. PubMed PMID: 12824408; PubMed Central PMCID:
PMC168992.
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| Year of publication | 2003 |
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| Rank by usage frequency | 20 |
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| Comments | 1)Gene information comprises of the number, strand, phase and Frame information. 2) The graphical output shows a)6 possible coding phases (+1, +2, +3 for the direct strand, -1, -2, -3 for the reverse one) b) introns on the forward (IF) and reverse (IR) strands c) other non coding regions (IG for intergenic or UTR regions) 3) Start, stop, donor and acceptor sites are marked on the graph. 4) The program is more specifically tuned for angiosperms. |
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| Function | Exon detail, Exon detail: number, Exon detail: start/end, Exon detail: length, Exon detail direct information, Gene Information, Species, Finds alternative splicing in other species |
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| Category | |
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| Input file format | DNA sequence in Fasta format |
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| Output file format | Tabular and Graphical Format. |
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| Limitation | |
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